NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold 2006871301

Scaffold 2006871301


Overview

Basic Information
Taxon OID2006543006 Open in IMG/M
Scaffold ID2006871301 Open in IMG/M
Source Dataset NameMarine microbial communities from anoxic basin of Saanich Inlet - SI040908_100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)1356
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Anoxic Basin Of Saanich Inlet In Vancouver, Canada

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.616667Long. (o)-123.5Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037239Metagenome / Metatranscriptome168Y

Sequences

Protein IDFamilyRBSSequence
2007017623F037239GAGMIRALSPYYIDTPLVYGGVTCDKYTLNVWVWNGNKSTPDNTNSYQITYENTTASTGSHSININAIIQDYIEFKEPTPSLVAGVQIIDGDNQQWVYTYVTYDEVATLYYEDTEIMALGYTYGNEGRNITTVANNTLLKPQQYKVNQAGSFVFPIYVPVTIAPAVSVSVKSYPALEINYTATPAQSSDSGEIVKYLG

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